[1] |
张国庆, 宁康, 职晓阳 ,等. 建设微生物组大数据中心发挥长期科学影响[J]. 中国科学院院刊, 2017(3): 280-289.
|
|
ZHANG G Q , NING K , ZHI X Y ,et al. Development of comprehensive microbiome big data warehouse/center for long-term scientific impact[J]. Bulletin of Chinese Acadamy of Sciences, 2017(3): 280-289.
|
[2] |
HANDELSMAN J , RONDON M R , BRADY S F ,et al. Molecular biological access to the chemistry of unknown soil microbes:a new frontier for natural products[J]. Chemistry& Biology, 1998,5(10): 245-249.
|
[3] |
WANG J , JIA H . Metagenome-wide association studies:fine-mining the microbiome[J]. Nat Rev Microbiol, 2016,14(8): 508-522.
|
[4] |
FANG H , CAI L , YU Y ,et al. Metagenomic analysis reveals the prevalence of biodegradation genes for organic pollutants in activated sludge[J]. Bioresource Technology, 2013,129(2): 209-218.
|
[5] |
DOS SANTOS H F , CURY J C , DO CARMO F L ,et al. Mangrove bacterial diversity and the impact of oil contamination revealed by pyrosequencing:bacterial proxies for oil pollution[J]. Plos One, 2011,6(3):>e16943.
|
[6] |
QIN N , YANG F , LI A ,et al. Alterations of the human gut microbiome in liver cirrhosis[J]. Nature, 2014,513(7516): 59-64.
|
[7] |
HE Z , PICENO Y , DENG Y ,et al. The phylogenetic composition and structure of soil microbial communities shifts in response to elevated carbon dioxide[J]. Isme Journal, 2012,6(2): 259-272.
|
[8] |
CHEN Y E , TSAO H . The skin microbiome:current perspectives and future challenges[J]. Journal of the American Academy of Dermatology, 2013,69(1): 143-155.
|
[9] |
TURNBAUGH P J , LEY R E , HAMADY M ,et al. The human microbiome project[J]. Nature, 2007,449(7164): 804-810.
|
[10] |
EHRLICH S D . Metagenomics of the intestinal microbiota:potential applications[J]. Gastroenterologie Clinique Et Biologique, 2010,34(4S1): S23-S28.
|
[11] |
PAGANI I , LIOLIOS K , JANSSON J ,et al. >The Genomes OnLine Database (GOLD) v.4:status of genomic and metagenomic projects and their associated metadata[J]. Nucleic Acids Research, 2012(40): 571-579.
|
[12] |
FIELD D , GARRITY G , GRAY T ,et al. The minimum information about a genome sequence (MIGS) specification[J]. Nature Biotechnology, 2008,26(5): 541-547.
|
[13] |
KOTTMANN R , GRAY T,MURPHY ,et al. A standard MIGS/MIMS compliant XML Schema:toward the development of the Genomic Contextual Data Markup Language (GCDML)[J]. Omics-a Journal of Integrative Biology, 2008,12(2): 115-121.
|
[14] |
YILMAZ P , KOTTMANN R , FIELD D ,et al. Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications[J]. Nature Biotechnology, 2011,29(5): 415-420.
|
[15] |
CARAUS I , ALSUWAILEM A A , NADON R ,et al. Detecting and overcoming systematic bias in high-throughput screening technologies:a comprehensive review of practical issues and methodological solutions[J]. Briefings in Bioinformatics, 2015,16(6):97416.
|
[16] |
SCHMIEDER R , EDWARDS R . Quality control and preprocessing of metagenomic datasets[J]. Bioinformatics, 2011,27(6): 863-864.
|
[17] |
BOLGER A M , LOHSE M , USADEL B . Trimmomatic:a flexible trimmer for Illumina sequence data[J]. Bioinformatics, 2014,30(15): 2114-2120.
|
[18] |
SCHMIEDER R , YAN W L , ROHWER F ,et al. TagCleaner:identification and removal of tag sequences from genomic and metagenomic datasets[J]. Bmc Bioinformatics, 2010,11(1): 1-14.
|
[19] |
LI H , DURBIN R . Fast and accurate longread alignment with Burrows-Wheeler transform[J]. Bioinformatics, 2010,26(5): 589-595.
|
[20] |
LANGMEAD B , TRAPNELL C , POP M ,et al. Ultrafast and memory-efficient alignment of short DNA sequences to the human genome[J]. Genome Biology, 2009,10(3):R25.
|
[21] |
SEGATA N , WALDRON L , BALLARINI A ,et al. Metagenomic microbial community profiling using unique clade-specific marker genes[J]. Nature Method, 2012,9(8): 811-814.
|